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    Classification:

    Direct RNA Sequencing


    Introduction


    Direct RNA Sequencing: Without reverse transcription or amplification, it enables direct reading of full-length poly(A)-tailed RNA molecules (rather than cDNA). This technology can detect RNA modification sites (e.g., m6A, m5C, pseudouridine ψ, inosine, and 2'-O-Me) on individual RNA molecules, enabling precise analysis of alternative splicing, fusion genes, and the identification of novel isoforms. Additionally, it provides relatively accurate estimation of poly(A) tail length, thereby preserving the native RNA characteristics.

    Applications


    Developmental Biology Research

    Oncology Research

    Immunoinfection Research

    Environmental Toxicology Research

    Highlights


    Detect RNA modifications (m5C, m6A, ψ, inosine, 2'-O-Me, etc.) at single-nucleotide resolution.

    Accurately estimate poly(A) tail length.

    Avoid the introduction of false-positive transcripts via direct RNA sequencing without reverse transcription or amplification.

    Library Construction Workflow


    f354a9403ccfdb0614231adbe7edbfaa_526cde08-611b-45c6-8ae9-e9ee4c652c32_看图王.jpg

    Analysis Workflow


    Direct RNA Sequencing.png

    Data Delivery File Formats


    FASTQ and POD5 Data Files

    Sequencing Yield Display


    Species TotalBase TotalReads N50 meanQ
    Human 24,186,756,830 21,156,455 1,685 21.49
    Human 26,236,107,976 20,699,814 1,781 21.79
    Plant 16,221,740,860 18,232,141 958 21.59
    Animal 24,079,670,614 24,346,060 1,213 21.56
    Animal 25,781,032,891 24,731,182 1,404 22
    Animal 20,875,860,663 17,684,923 1,681 22
    Animal 19,551,477,538 20,416,360 1,296 21.65
    Animal 20,325,290,079 18,077,586 1,589 21.71
    Cell 22,865,483,808 17,417,836 1,938 20.43
    Mammal 20,875,860,663 17,684,923 1,681 22
    Mammal 20,325,290,079 18,077,586 1,589 21.71
    Mammal 22,710,639,651 23,941,576 1,296 21.65
    Plant 19,398,123,548 21,691,091 1,209 21.84
    Plant 18,097,091,216 20,688,982 1,161 21.34

    Sample Requirements


    Sample Types

    Amount RNA Integrity Purity
    Total RNA Data>10Gb: ≥15 μg;
    Data<10Gb: ≥6 μg;
    The RNA sample is clear and transparent, with no insoluble matter. The 28S and 18S main bands are clear, with 28S/18S ratio ≥ 1, and the insect 18S band is clear without any trailing. A260/280=1.9-2.1; A260/230≥1.0

     

    Tissue Type

    Direct RNA Sequencing

    Dry Weight of Fresh Animal Tissue

    ≥1 g

    Dry Weight of Fresh Plant Tissue

    ≥2 g

    Freshly Cultured Cells

    ≥1-5×10⁷

    Freshly Collected Whole Blood

    10-15 ml

    Microbial Biomass

    ≥5×10⁷ or ≥0.2 g

    Publications


    Year Journal

    Impact Factor

    Title
    2025

    Nature Communications

    15.7

    A mutually antagonistic mechanism mediated by RNA m6A modification in plant-virus interactions

    2025 Science Bulletin 21.1

    Epi-transcriptome analysis reveals the lack of N6-methyladenosine modification in two RNA viruses infecting watermelon

    2025 Genome Biology 10.1

    Widespread impact of transposable elements on the evolution of

    post-transcriptional regulation in the cotton genus Gossypium

    2025 Molecular Cell 14.5

    Single-molecule m6A detection empowered by endogenous labeling unveils complexities across RNA isoforms

    2025 Developmental Cell 10.7

    Nanopore RNA direct sequencing identifies that m6A modification is essential for sorbitol-controlled resistance to Alternaria alternata in apple

    2024

    Signal Transduction and Targeted Therapy

    40.8 Characterization of ACTN4 as a novel antiviral target against SARS-CoV-2

    What's the best choice?


     

    Full-length transcript sequencing

    Tail Iso-seq Direct RNA-seq Direct cDNA-seq

    Full-Length lncRNA Sequencing

    Long non-coding RNAs Sequencing

    PacBio iso-seq

    RNA-seq

    Gene quantification

    +++ +++ +++ +++ +++ +++ + +++

    Gene difference analysis

    +++ +++ +++ +++ +++ +++ + +++

    Isoform quantification

    +++ +++ +++ +++ +++ + + +

    Isoform difference analysis

    +++ +++ +++ +++ +++ + + +

    Alternative splicing

    +++ +++ +++ +++ +++ + +++ +

    fusion gene

    +++ +++ +++ +++ +++ + +++ +

    novel transcript prediction

    +++ +++ +++ +++ +++ + +++ +

    Allele analysis

    +++ +++ +++ +++ +++ NO +++ +

    Alternative polyadenylation

    +++ +++ +++ +++ +++ + +++ +

    Poly(A) length

    NO +++ +++ NO NO NO NO NO

    LncRNA analysis

    + + + + +++ +++ NO +

    Modification analysis (m6A, m5C, Ψ, I)

    NO NO +++ NO NO NO NO NO

    Positive and negative chain analysis

    +++ +++ +++ +++ +++ +++ + NO

    Library Construction

    Reverse transcription and PCR amplification Reverse transcription and PCR amplification Without reverse transcription and PCR amplification Only reverse transcription Reverse transcription and PCR amplification Reverse transcription and PCR amplification Reverse transcription and PCR amplification Reverse transcription and PCR amplification

    Sequencing platform

    Nanopore PromethION Nanopore PromethION Nanopore PromethION Nanopore PromethION Nanopore PromethION Illumina PacBio Revio Illumina

    Contact Us

    If you are interested in our long-read sequencing services or potential collaboration, please contact us. Our team is ready to support your research with tailored solutions. We also welcome feedback from users to help us improve our services.

    Contact Us
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    WhatsApp:1-(617)-223-7544

    Tel:16172237544

    Email:service@sailgene.com

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